PhyloFlow is a fully-customizable and adaptable workflow system for phylogenetic inference. It is intended to reproduce many of the existing phylogenetic inference systems adding the possibility to personalize the tools and parameters for each stage. Furthermore, our system allows the configuration of new ad-hoc workflows for specific needs.
The software is available here.
The manual will be available soon.
PhyloFlow: A fully customizable and automatic workflow for phylogenetic reconstruction. J. Álvarez-Jarreta, G. de Miguel Casado and E. Mayordomo. Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2014), 1-7. 2014.
PhyloFlow: A Fully Customizable and Automatic Workflow for Phylogeny Estimation. J. Álvarez-Jarreta, G. de Miguel Casado and E. Mayordomo. 13th European Conference on Computational Biology (ECCB 2014). 2014.
Workflows with model selection: a multilocus approach to phylogenetic analysis. J. Álvarez, R. Blanco and E. Mayordomo. Proceedings of the 5th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2011). Springer-Verlag Advances in Soft Computing, 93/2011: 39-47. 2011.
Any question or support request should be addressed to: zaramit at googlegroups dot com